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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15766 and 15767 are separated by 283 nucleotides
15767 and 15768 are separated by 163 nucleotides
15768 and 15769 are separated by 478 nucleotides
15769 and 15770 are separated by 132 nucleotides
mRNA_7398: 15766 - KOG0266 WD40 repeat-containing protein, at 184,149 to 185,888
15766
mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240
15767
mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530
15768
mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201
15769
mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902
15770
Group
Condition
mRNA
_7398
mRNA
_7399
mRNA
_7400
mRNA
_7401
mRNA
_7402
15766
15767
15768
15769
15770
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.2
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.3
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.3
-0.1
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.3
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.0
-0.3
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
+0.0
-0.2
growth on ypd
YPD
-0.1
N.D.
-0.0
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.2
+0.1
-0.4
auxotrophy
Dropout Complete
-0.1
N.D.
-0.1
-0.0
+0.0
auxotrophy
YNB Glucose
-0.0
N.D.
+0.1
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.4
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.3
+0.5
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.2
+0.1
-0.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.2
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.2
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.4
+0.3
-0.2
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