Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 15767 and 15768 are separated by 163 nucleotides15768 and 15769 are separated by 478 nucleotides15769 and 15770 are separated by 132 nucleotides15770 and 15771 are separated by 721 nucleotides mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240 15767 mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530 15768 mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201 15769 mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902 15770 mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387 15771
Group Condition mRNA_7399 mRNA_7400 mRNA_7401 mRNA_7402 mRNA_7403
15767 15768 15769 15770 15771
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.3 -0.2 -0.7 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.3 -0.1 -0.8 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -0.0 -0.3 -0.8 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -0.3 -0.3 -0.4 N.D.
facs on lipid accumulation Sorted No BODIPY Gate N.D. -0.2 -0.2 -0.6 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -0.1 -0.0 -0.5 N.D.
ypd buoyancy 40 hrs Low Buoyancy N.D. -0.3 +0.0 -0.2 N.D.
facs on lipid accumulation Sorted High BODIPY Gate N.D. -0.4 +0.1 -0.1 N.D.
growth on ypd YPD N.D. -0.0 -0.3 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy N.D. -0.3 +0.2 -0.1 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -0.4 +0.2 +0.0 N.D.
auxotrophy YNB Glucose 75mM Methionine N.D. +0.0 -0.1 -0.1 N.D.
auxotrophy YNB Glucose N.D. +0.1 +0.1 -0.3 N.D.
auxotrophy Dropout Complete N.D. -0.1 -0.0 +0.0 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation N.D. +0.2 +0.1 -0.4 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.2 +0.1 +0.1 N.D.
growth on ricinoleic acid YNB Glucose N.D. -0.3 +0.5 +0.0 N.D.
ypd buoyancy 40 hrs Median Buoyancy N.D. +0.2 +0.1 -0.1 N.D.
growth on oleic acid YNB Glucose N.D. +0.2 +0.1 +0.1 N.D.
auxotrophy YNB Glucose 75mM Arginine N.D. +0.4 +0.3 -0.2 N.D.
growth on oleic acid YNB Oleic Acid N.D. +0.2 +0.4 -0.1 N.D.
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