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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15768 and 15769 are separated by 478 nucleotides
15769 and 15770 are separated by 132 nucleotides
15770 and 15771 are separated by 721 nucleotides
15771 and 15772 are separated by 208 nucleotides
mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530
15768
mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201
15769
mRNA_7402: 15770 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 193,334 to 195,902
15770
mRNA_7403: 15771 - Hypothetical Protein, at 196,624 to 197,387
15771
mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665
15772
Group
Condition
mRNA
_7400
mRNA
_7401
mRNA
_7402
mRNA
_7403
mRNA
_7404
15768
15769
15770
15771
15772
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.7
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.4
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.8
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
-0.6
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
+0.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.5
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
+0.1
N.D.
-0.5
auxotrophy
Dropout Complete
-0.1
-0.0
+0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.3
+0.5
+0.0
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose
+0.1
+0.1
-0.3
N.D.
-0.0
growth on ypd
YPD
-0.0
-0.3
-0.1
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
-0.1
N.D.
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.3
-0.2
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
-0.1
N.D.
+0.2
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