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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15772 and 15773 are separated by 211 nucleotides
15773 and 15774 are separated by 745 nucleotides
15774 and 15775 are separated by 581 nucleotides
15775 and 15776 are separated by 120 nucleotides
mRNA_7404: 15772 - HMMPfam-Protein of unknown function (DUF2470)-PF10615, at 197,596 to 198,665
15772
mRNA_7405: 15773 - KOG1589 Uncharacterized conserved protein, at 198,877 to 199,727
15773
mRNA_7406: 15774 - Hypothetical Protein, at 200,473 to 201,495
15774
mRNA_7407: 15775 - Hypothetical Protein, at 202,077 to 204,575
15775
mRNA_7408: 15776 - K18422 MOV10 helicase MOV-10, at 204,696 to 207,946
15776
Group
Condition
mRNA
_7404
mRNA
_7405
mRNA
_7406
mRNA
_7407
mRNA
_7408
15772
15773
15774
15775
15776
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
N.D.
-0.4
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.4
-0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
-0.3
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.5
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.1
+0.2
auxotrophy
Dropout Complete
-0.3
N.D.
+0.1
+0.3
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.7
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.4
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.0
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.4
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.3
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.0
+0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.6
+0.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.1
+0.2
growth on ypd
YPD
+0.4
N.D.
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.3
+0.2
+0.2
auxotrophy
YNB Glucose
-0.0
N.D.
+0.1
+0.5
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
+0.0
+0.2
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