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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15781 and 15782 are separated by 258 nucleotides
15782 and 15783 are separated by 188 nucleotides
15783 and 15784 are separated by 354 nucleotides
15784 and 15785 are separated by 505 nucleotides
mRNA_7413: 15781 - K17550 PPP1R7, SDS22 protein phosphatase 1 regulatory subunit 7, at 221,244 to 223,051
15781
mRNA_7414: 15782 - Hypothetical Protein, at 223,310 to 224,480
15782
mRNA_7415: 15783 - K00623 CHAT choline O-acetyltransferase, at 224,669 to 227,280
15783
mRNA_7416: 15784 - Hypothetical Protein, at 227,635 to 230,239
15784
mRNA_7417: 15785 - K03353 APC6, CDC16 anaphase-promoting complex subunit 6, at 230,745 to 233,451
15785
Group
Condition
mRNA
_7413
mRNA
_7414
mRNA
_7415
mRNA
_7416
mRNA
_7417
15781
15782
15783
15784
15785
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.6
-2.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
N.D.
-2.6
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
N.D.
-1.3
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
N.D.
-1.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
N.D.
-0.6
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
-0.9
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.2
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
+0.4
-0.5
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
-1.4
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.9
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
-0.4
+1.0
growth on ypd
YPD
N.D.
+0.2
N.D.
-0.6
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
N.D.
-0.4
+1.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+1.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
N.D.
+1.0
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
-0.2
+1.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
N.D.
+0.3
+1.7
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