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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15784 and 15785 are separated by 505 nucleotides
15785 and 15786 are separated by 919 nucleotides
15786 and 15787 are separated by 942 nucleotides
15787 and 15788 are separated by 291 nucleotides
mRNA_7416: 15784 - Hypothetical Protein, at 227,635 to 230,239
15784
mRNA_7417: 15785 - K03353 APC6, CDC16 anaphase-promoting complex subunit 6, at 230,745 to 233,451
15785
mRNA_7418: 15786 - Hypothetical Protein, at 234,371 to 235,150
15786
mRNA_7419: 15787 - Hypothetical Protein, at 236,093 to 236,724
15787
mRNA_7420: 15788 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 237,016 to 237,326
15788
Group
Condition
mRNA
_7416
mRNA
_7417
mRNA
_7418
mRNA
_7419
mRNA
_7420
15784
15785
15786
15787
15788
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-2.0
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.6
-0.1
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-1.3
-0.8
+0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-1.5
+0.1
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.4
+0.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.6
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.2
+0.0
+0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.1
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.5
+0.0
+0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+1.2
-0.3
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
+0.7
-0.1
+1.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+1.0
-0.4
-0.0
+0.5
N.D.
auxotrophy
Dropout Complete
-1.4
+1.0
-0.1
+1.9
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.1
-0.1
+1.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.0
-0.2
+1.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.2
+1.5
N.D.
growth on ypd
YPD
-0.6
+1.1
-0.0
+1.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
-0.0
+1.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+1.2
+0.1
+1.8
N.D.
auxotrophy
YNB Glucose
-0.2
+1.4
+0.1
+1.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+1.7
+0.1
+1.9
N.D.
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