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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15794 and 15795 are separated by 776 nucleotides
15795 and 15796 are separated by 1046 nucleotides
15796 and 15797 are separated by 52 nucleotides
15797 and 15798 are separated by 644 nucleotides
mRNA_7426: 15794 - Hypothetical Protein, at 246,763 to 247,720
15794
mRNA_7427: 15795 - SUPERFAMILY--SSF51197, at 248,497 to 250,090
15795
mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251,137 to 252,658
15796
mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477
15797
mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039
15798
Group
Condition
mRNA
_7426
mRNA
_7427
mRNA
_7428
mRNA
_7429
mRNA
_7430
15794
15795
15796
15797
15798
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.5
-2.5
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.2
-0.7
-0.1
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-1.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
-1.2
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.1
-0.5
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-1.5
+0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.4
-0.6
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
-0.8
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
-0.6
+0.3
-0.3
auxotrophy
Dropout Complete
+0.2
+0.1
-0.3
-0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.1
-0.6
-0.4
+0.4
auxotrophy
YNB Glucose
+0.3
-0.0
-0.3
-0.1
-0.4
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.6
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.4
+0.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
+0.0
+0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.5
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.8
+0.8
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
+0.2
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.3
+0.4
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
+0.8
+0.2
-0.2
growth on ypd
YPD
-0.1
+0.7
+0.6
-0.0
+0.3
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