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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15796 and 15797 are separated by 52 nucleotides
15797 and 15798 are separated by 644 nucleotides
15798 and 15799 are separated by 329 nucleotides
15799 and 15800 are separated by 1471 nucleotides
mRNA_7428: 15796 - Interpro XLF-Cernunnos, XRcc4-like factor, NHEJ component, at 251,137 to 252,658
15796
mRNA_7429: 15797 - KOG0254 Predicted transporter (major facilitator superfamily), at 252,711 to 255,477
15797
mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039
15798
mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258,369 to 261,553
15799
mRNA_7432: 15800 - KOG4197 FOG PPR repeat, at 263,025 to 264,767
15800
Group
Condition
mRNA
_7428
mRNA
_7429
mRNA
_7430
mRNA
_7431
mRNA
_7432
15796
15797
15798
15799
15800
ypd buoyancy
40 hrs No Buoyancy Separation
-2.5
-0.2
-0.6
+0.4
N.D.
auxotrophy
Dropout Complete
-0.3
-0.5
-0.3
-1.1
N.D.
auxotrophy
YNB Glucose
-0.3
-0.1
-0.4
-1.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.3
-0.3
-1.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.8
-0.1
-0.2
-0.3
N.D.
growth on oleic acid
YNB Glucose
-0.6
+0.2
-0.4
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.1
-0.6
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-1.5
+0.2
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.2
+0.1
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.6
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
-0.3
-1.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.4
+0.4
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.1
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
-0.1
-0.9
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.8
+0.2
-0.2
-0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.2
-0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
+0.3
+0.8
N.D.
growth on ypd
YPD
+0.6
-0.0
+0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.3
-0.4
+0.7
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.8
+0.2
+0.1
+0.1
N.D.
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