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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15798 and 15799 are separated by 329 nucleotides
15799 and 15800 are separated by 1471 nucleotides
15800 and 15801 are separated by 412 nucleotides
15801 and 15802 are separated by 381 nucleotides
mRNA_7430: 15798 - HMMPfam-Methyltransferase domain-PF13489,SUPERFAMILY--SSF53335, at 256,122 to 258,039
15798
mRNA_7431: 15799 - K12396 AP3D AP-3 complex subunit delta, at 258,369 to 261,553
15799
mRNA_7432: 15800 - KOG4197 FOG PPR repeat, at 263,025 to 264,767
15800
mRNA_7433: 15801 - K10356 MYO1 myosin I, at 265,180 to 270,208
15801
mRNA_7434: 15802 - HMMPfam-Outer membrane protein TOM13-PF08219, at 270,590 to 273,357
15802
Group
Condition
mRNA
_7430
mRNA
_7431
mRNA
_7432
mRNA
_7433
mRNA
_7434
15798
15799
15800
15801
15802
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-1.0
N.D.
-1.9
-2.2
auxotrophy
YNB Glucose
-0.4
-1.0
N.D.
-0.9
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.9
N.D.
-1.2
-0.6
auxotrophy
Dropout Complete
-0.3
-1.1
N.D.
-0.9
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.7
N.D.
-0.9
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
N.D.
-1.5
-0.5
growth on oleic acid
YNB Glucose
-0.4
-0.6
N.D.
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.0
N.D.
-0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
-0.6
+0.3
growth on ypd
YPD
+0.3
-0.3
N.D.
-0.2
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.7
N.D.
+0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
N.D.
+0.4
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
N.D.
+0.7
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.8
N.D.
-0.8
+1.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.1
N.D.
+1.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
N.D.
+0.7
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.5
N.D.
+0.7
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.3
N.D.
+1.5
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.4
N.D.
+2.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.0
N.D.
+0.6
+1.2
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.1
N.D.
+1.0
+1.2
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