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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15803 and 15804 are separated by 485 nucleotides
15804 and 15805 are separated by 399 nucleotides
15805 and 15806 are separated by 253 nucleotides
15806 and 15807 are separated by 926 nucleotides
mRNA_7435: 15803 - K09539 DNAJC19 DnaJ homolog subfamily C member 19, at 274,120 to 274,486
15803
mRNA_7436: 15804 - Hypothetical Protein, at 274,972 to 276,124
15804
mRNA_7437: 15805 - K01756 purB, ADSL adenylosuccinate lyase, at 276,524 to 278,511
15805
mRNA_7438: 15806 - K01455 E3.5.1.49 formamidase, at 278,765 to 280,421
15806
mRNA_7439: 15807 - K20989 DUR3 urea-proton symporter, at 281,348 to 284,451
15807
Group
Condition
mRNA
_7435
mRNA
_7436
mRNA
_7437
mRNA
_7438
mRNA
_7439
15803
15804
15805
15806
15807
auxotrophy
Dropout Complete
N.D.
-0.8
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
N.D.
-0.0
-0.0
auxotrophy
YNB Glucose
N.D.
-0.4
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.5
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
N.D.
+0.1
-0.0
growth on ypd
YPD
N.D.
-0.6
N.D.
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
N.D.
+0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.3
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
N.D.
+0.6
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
N.D.
+0.9
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+1.0
+0.1
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