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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15810 and 15811 are separated by 740 nucleotides
15811 and 15812 are separated by 166 nucleotides
15812 and 15813 are separated by 236 nucleotides
15813 and 15814 are separated by 590 nucleotides
mRNA_7442: 15810 - K02886 RP-L2, MRPL2, rplB large subunit ribosomal protein L2, at 288,687 to 290,089
15810
mRNA_7443: 15811 - Hypothetical Protein, at 290,830 to 292,138
15811
mRNA_7444: 15812 - Hypothetical Protein, at 292,305 to 293,773
15812
mRNA_7445: 15813 - Hypothetical Protein, at 294,010 to 294,708
15813
mRNA_7446: 15814 - K14085 ALDH7A1 aldehyde dehydrogenase family 7 member A1, at 295,299 to 297,030
15814
Group
Condition
mRNA
_7442
mRNA
_7443
mRNA
_7444
mRNA
_7445
mRNA
_7446
15810
15811
15812
15813
15814
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
+0.2
-0.8
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.9
-0.0
-1.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.1
-0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
-0.7
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
-0.7
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.5
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.6
-0.2
-0.1
+0.4
auxotrophy
Dropout Complete
N.D.
+0.1
+0.0
-0.4
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
-0.1
-0.3
-0.3
growth on ypd
YPD
N.D.
+0.2
+0.4
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
-0.2
+0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.0
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.0
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.4
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.6
-0.3
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.3
-0.3
+0.5
auxotrophy
YNB Glucose
N.D.
+0.2
+0.2
-0.1
+0.4
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