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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15821 and 15822 are separated by 189 nucleotides
15822 and 15823 are separated by 519 nucleotides
15823 and 15824 are separated by 355 nucleotides
15824 and 15825 are separated by 1001 nucleotides
mRNA_7453: 15821 - K14407 CSTF2, RNA15 cleavage stimulation factor subunit 2, at 310,892 to 312,649
15821
mRNA_7454: 15822 - K01412 PMPCA, MAS2 mitochondrial-processing peptidase subunit alpha, at 312,839 to 314,664
15822
mRNA_7455: 15823 - KOG1740 Predicted mitochondrial/chloroplast ribosomal protein S17, at 315,184 to 315,974
15823
mRNA_7456: 15824 - Hypothetical Protein, at 316,330 to 316,788
15824
mRNA_7457: 15825 - Hypothetical Protein, at 317,790 to 319,145
15825
Group
Condition
mRNA
_7453
mRNA
_7454
mRNA
_7455
mRNA
_7456
mRNA
_7457
15821
15822
15823
15824
15825
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
N.D.
-1.5
-0.0
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
N.D.
-1.0
+0.2
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
-1.9
N.D.
+0.7
-0.1
-1.6
auxotrophy
YNB Glucose 75mM Methionine
-2.3
N.D.
-0.7
+0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-2.1
N.D.
-0.5
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
N.D.
-0.9
+0.3
+0.0
auxotrophy
Dropout Complete
-0.8
N.D.
-0.8
+0.2
-0.0
growth on oleic acid
YNB Glucose
-2.5
N.D.
+0.5
+0.3
+0.5
auxotrophy
YNB Glucose
-1.3
N.D.
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.0
N.D.
-0.3
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
N.D.
-1.4
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.8
N.D.
-0.2
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
-0.8
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.8
N.D.
+0.4
-0.4
-0.7
growth on ypd
YPD
+0.3
N.D.
-0.6
-0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.8
+0.5
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.7
N.D.
+0.0
-0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.4
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.9
N.D.
-1.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.9
N.D.
-0.6
+0.2
+0.1
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