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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15827 and 15828 are separated by 341 nucleotides
15828 and 15829 are separated by 484 nucleotides
15829 and 15830 are separated by 343 nucleotides
15830 and 15831 are separated by 800 nucleotides
mRNA_7459: 15827 - K10997 TOF1, SWI1 replication fork protection complex subunit Tof1/Swi1, at 322,398 to 327,166
15827
mRNA_7460: 15828 - K00698 CHS1 chitin synthase, at 327,508 to 332,421
15828
mRNA_7461: 15829 - K08964 mtnB methylthioribulose-1-phosphate dehydratase, at 332,906 to 334,515
15829
mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334,859 to 336,377
15830
mRNA_7463: 15831 - Hypothetical Protein, at 337,178 to 338,673
15831
Group
Condition
mRNA
_7459
mRNA
_7460
mRNA
_7461
mRNA
_7462
mRNA
_7463
15827
15828
15829
15830
15831
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.7
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
-0.1
-0.0
growth on ypd
YPD
N.D.
N.D.
-0.3
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
+0.2
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.1
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.5
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.1
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.8
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.9
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
+0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.3
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.9
+0.4
+0.4
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