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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15829 and 15830 are separated by 343 nucleotides
15830 and 15831 are separated by 800 nucleotides
15831 and 15832 are separated by 594 nucleotides
15832 and 15833 are separated by 181 nucleotides
mRNA_7461: 15829 - K08964 mtnB methylthioribulose-1-phosphate dehydratase, at 332,906 to 334,515
15829
mRNA_7462: 15830 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 334,859 to 336,377
15830
mRNA_7463: 15831 - Hypothetical Protein, at 337,178 to 338,673
15831
mRNA_7464: 15832 - BLAST expressed protein [Schizophyllum commune H4-8], at 339,268 to 340,751
15832
mRNA_7465: 15833 - K08518 STXBP5, SRO7_77 syntaxin-binding protein 5, at 340,933 to 344,642
15833
Group
Condition
mRNA
_7461
mRNA
_7462
mRNA
_7463
mRNA
_7464
mRNA
_7465
15829
15830
15831
15832
15833
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.4
-0.3
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.3
-0.3
-0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
-0.6
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.2
-0.0
-0.6
-0.2
growth on ypd
YPD
-0.3
-0.0
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
-0.0
+0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.5
+0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.0
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.0
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.8
-0.1
+0.2
-0.9
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.3
-0.2
+0.0
auxotrophy
YNB Glucose
+0.1
-0.1
-0.0
+0.3
+0.0
auxotrophy
Dropout Complete
+0.5
-0.2
-0.2
+0.3
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.3
+0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.1
+0.8
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.1
+0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.9
+0.2
-0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.0
+0.2
-0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.4
+0.4
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.0
+0.6
+0.5
+0.5
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