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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15834 and 15835 are separated by 147 nucleotides
15835 and 15836 are separated by 350 nucleotides
15836 and 15837 are separated by 193 nucleotides
15837 and 15838 are separated by 78 nucleotides
mRNA_7466: 15834 - K17887 SNX25, MDM1 sorting nexin-25, at 345,181 to 349,645
15834
mRNA_7467: 15835 - Hypothetical Protein, at 349,793 to 351,109
15835
mRNA_7468: 15836 - Hypothetical Protein, at 351,460 to 352,308
15836
mRNA_7469: 15837 - K20403 TTI1 TELO2-interacting protein 1, at 352,502 to 356,237
15837
mRNA_7470: 15838 - K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16, at 356,316 to 361,042
15838
Group
Condition
mRNA
_7466
mRNA
_7467
mRNA
_7468
mRNA
_7469
mRNA
_7470
15834
15835
15836
15837
15838
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.0
+0.4
N.D.
N.D.
growth on ypd
YPD
-0.0
+0.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.0
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
+0.0
+0.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
+0.0
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.1
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.0
+0.3
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
+0.2
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.9
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.5
N.D.
N.D.
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