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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15838 and 15839 are separated by 472 nucleotides
15839 and 15840 are separated by 1040 nucleotides
15840 and 15841 are separated by 833 nucleotides
15841 and 15842 are separated by 276 nucleotides
mRNA_7470: 15838 - K12815 DHX38, PRP16 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16, at 356,316 to 361,042
15838
mRNA_7471: 15839 - K00838 ARO8 aromatic amino acid aminotransferase I, at 361,515 to 364,061
15839
mRNA_7472: 15840 - K03680 EIF2B4 translation initiation factor eIF-2B subunit delta, at 365,102 to 366,661
15840
mRNA_7473: 15841 - Hypothetical Protein, at 367,495 to 368,778
15841
mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143
15842
Group
Condition
mRNA
_7470
mRNA
_7471
mRNA
_7472
mRNA
_7473
mRNA
_7474
15838
15839
15840
15841
15842
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
N.D.
-0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.1
-0.3
growth on ypd
YPD
N.D.
-0.0
N.D.
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.5
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
N.D.
-0.4
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
N.D.
+0.4
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
N.D.
+0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
N.D.
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
+0.5
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
N.D.
+0.4
+0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
+0.5
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.1
N.D.
+0.5
+0.3
auxotrophy
Dropout Complete
N.D.
-0.2
N.D.
+0.5
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
N.D.
-0.1
+1.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
N.D.
+0.6
+0.6
auxotrophy
YNB Glucose
N.D.
-0.2
N.D.
+0.6
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
N.D.
+0.7
+1.2
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