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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15840 and 15841 are separated by 833 nucleotides
15841 and 15842 are separated by 276 nucleotides
15842 and 15843 are separated by 2220 nucleotides
15843 and 15844 are separated by 1424 nucleotides
mRNA_7472: 15840 - K03680 EIF2B4 translation initiation factor eIF-2B subunit delta, at 365,102 to 366,661
15840
mRNA_7473: 15841 - Hypothetical Protein, at 367,495 to 368,778
15841
mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143
15842
mRNA_7475: 15843 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 374,364 to 376,730
15843
mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378,155 to 380,112
15844
Group
Condition
mRNA
_7472
mRNA
_7473
mRNA
_7474
mRNA
_7475
mRNA
_7476
15840
15841
15842
15843
15844
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.8
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.2
-0.7
-0.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.3
-0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
-0.5
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.2
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
-0.0
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
+0.6
-0.7
-0.9
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
+0.4
-0.2
-0.8
growth on ypd
YPD
N.D.
+0.3
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
+0.3
+0.2
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.0
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.3
+0.3
-0.8
auxotrophy
YNB Glucose
N.D.
+0.6
+0.6
+0.1
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+1.2
+0.0
-0.4
growth on oleic acid
YNB Glucose
N.D.
+0.5
+0.3
+0.7
-0.6
auxotrophy
Dropout Complete
N.D.
+0.5
+0.5
+0.5
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
+1.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+1.2
+0.5
-1.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.6
+0.9
+0.1
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