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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15842 and 15843 are separated by 2220 nucleotides
15843 and 15844 are separated by 1424 nucleotides
15844 and 15845 are separated by 366 nucleotides
15845 and 15846 are separated by 246 nucleotides
mRNA_7474: 15842 - HMMPfam-Glycosyl transferases group 1-PF00534,HMMPfam-Starch synthase catalytic domain-PF08323,SUPERFAMILY--SSF53756, at 369,055 to 372,143
15842
mRNA_7475: 15843 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 374,364 to 376,730
15843
mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378,155 to 380,112
15844
mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380,479 to 382,307
15845
mRNA_7478: 15846 - Hypothetical Protein, at 382,554 to 382,817
15846
Group
Condition
mRNA
_7474
mRNA
_7475
mRNA
_7476
mRNA
_7477
mRNA
_7478
15842
15843
15844
15845
15846
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.1
-0.5
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.7
-0.8
+0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.5
-0.8
-0.0
-0.5
growth on ricinoleic acid
YNB Glucose
+0.6
-0.7
-0.9
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.0
-0.3
+0.0
+0.1
growth on ypd
YPD
-0.2
-0.3
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
-0.2
-0.8
+0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.4
-0.3
-0.1
+0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.4
-0.2
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.9
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.2
+0.0
-0.4
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.0
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.1
+0.2
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-0.8
+0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.3
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
+0.6
+0.1
-0.8
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.2
+0.5
-1.1
-0.3
+0.4
growth on oleic acid
YNB Glucose
+0.3
+0.7
-0.6
+0.5
+0.1
auxotrophy
Dropout Complete
+0.5
+0.5
-0.5
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+1.5
+0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.9
+0.1
+0.1
-0.0
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