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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15844 and 15845 are separated by 366 nucleotides
15845 and 15846 are separated by 246 nucleotides
15846 and 15847 are separated by 205 nucleotides
15847 and 15848 are separated by 123 nucleotides
mRNA_7476: 15844 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 378,155 to 380,112
15844
mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380,479 to 382,307
15845
mRNA_7478: 15846 - Hypothetical Protein, at 382,554 to 382,817
15846
mRNA_7479: 15847 - Hypothetical Protein, at 383,023 to 384,509
15847
mRNA_7480: 15848 - K01868 TARS, thrS threonyl-tRNA synthetase, at 384,633 to 387,547
15848
Group
Condition
mRNA
_7476
mRNA
_7477
mRNA
_7478
mRNA
_7479
mRNA
_7480
15844
15845
15846
15847
15848
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.1
+0.1
+0.0
-2.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.3
+0.4
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.4
-0.4
-0.3
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.5
-0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.0
-0.4
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.9
+0.3
-0.3
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.0
-0.5
+0.0
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.5
+0.1
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.0
-0.5
+0.0
+0.8
auxotrophy
Dropout Complete
-0.5
+0.5
+0.1
-0.5
+0.2
growth on oleic acid
YNB Glucose
-0.6
+0.5
+0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.0
-0.2
-0.0
auxotrophy
YNB Glucose
-0.8
+0.5
+0.2
-0.2
+0.3
growth on ypd
YPD
+0.1
-0.0
+0.0
-0.3
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.5
-0.3
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.0
-0.3
+0.9
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.8
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
+0.2
-0.2
+1.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
+0.1
+0.1
+1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.1
+0.4
+1.1
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