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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15847 and 15848 are separated by 123 nucleotides
15848 and 15849 are separated by 196 nucleotides
15849 and 15850 are separated by 461 nucleotides
15850 and 15851 are separated by 328 nucleotides
mRNA_7479: 15847 - Hypothetical Protein, at 383,023 to 384,509
15847
mRNA_7480: 15848 - K01868 TARS, thrS threonyl-tRNA synthetase, at 384,633 to 387,547
15848
mRNA_7481: 15849 - HMMPfam-Mitochondrial domain of unknown function (DUF1713)-PF08213, at 387,744 to 389,157
15849
mRNA_7482: 15850 - Hypothetical Protein, at 389,619 to 390,464
15850
mRNA_7483: 15851 - HMMPfam-Stress-induced bacterial acidophilic repeat motif-PF10685, at 390,793 to 391,582
15851
Group
Condition
mRNA
_7479
mRNA
_7480
mRNA
_7481
mRNA
_7482
mRNA
_7483
15847
15848
15849
15850
15851
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-2.5
N.D.
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
N.D.
-0.1
N.D.
auxotrophy
Dropout Complete
-0.5
+0.2
N.D.
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
N.D.
+0.1
N.D.
growth on ypd
YPD
-0.3
+0.4
N.D.
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
N.D.
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
N.D.
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.9
N.D.
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.1
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.3
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose
-0.2
+0.3
N.D.
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.5
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
N.D.
+0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+1.2
N.D.
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.8
N.D.
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.7
N.D.
+0.7
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.6
N.D.
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+1.1
N.D.
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+1.4
N.D.
+0.3
N.D.
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