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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15853 and 15854 are separated by 590 nucleotides
15854 and 15855 are separated by 738 nucleotides
15855 and 15856 are separated by 2483 nucleotides
15856 and 15857 are separated by 148 nucleotides
mRNA_7485: 15853 - K08158 MDR1, FLR1, CAF5 MFS transporter, DHA1 family, multidrug resistance protein, at 394,901 to 397,101
15853
mRNA_7486: 15854 - K08287 E2.7.12.1 dual-specificity kinase, at 397,692 to 399,920
15854
mRNA_7487: 15855 - K17619 MDP1 magnesium-dependent phosphatase 1, at 400,659 to 401,356
15855
mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403,840 to 407,882
15856
mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408,031 to 409,638
15857
Group
Condition
mRNA
_7485
mRNA
_7486
mRNA
_7487
mRNA
_7488
mRNA
_7489
15853
15854
15855
15856
15857
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-2.0
N.D.
+0.4
-2.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-1.7
N.D.
+0.3
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.7
N.D.
-0.3
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-1.5
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.1
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.6
N.D.
-0.0
-0.4
growth on oleic acid
YNB Oleic Acid
-0.5
-0.2
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.2
N.D.
+0.2
+0.5
growth on oleic acid
YNB Glucose
-0.5
+0.0
N.D.
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.6
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.2
N.D.
+0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
N.D.
-0.1
-0.2
auxotrophy
Dropout Complete
-0.3
+0.6
N.D.
-0.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
N.D.
+0.0
+0.1
growth on ypd
YPD
-0.1
-0.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.6
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.4
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.8
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.3
N.D.
+0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.8
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose
-0.2
+0.8
N.D.
+0.2
+0.2
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