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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15855 and 15856 are separated by 2483 nucleotides
15856 and 15857 are separated by 148 nucleotides
15857 and 15858 are separated by 87 nucleotides
15858 and 15859 are separated by 86 nucleotides
mRNA_7487: 15855 - K17619 MDP1 magnesium-dependent phosphatase 1, at 400,659 to 401,356
15855
mRNA_7488: 15856 - K00558 DNMT1, dcm DNA (cytosine-5)-methyltransferase 1, at 403,840 to 407,882
15856
mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408,031 to 409,638
15857
mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732
15858
mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834
15859
Group
Condition
mRNA
_7487
mRNA
_7488
mRNA
_7489
mRNA
_7490
mRNA
_7491
15855
15856
15857
15858
15859
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-2.5
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-1.1
-0.3
+0.0
auxotrophy
Dropout Complete
N.D.
-0.0
-0.4
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.3
-0.9
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
-0.9
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.4
+0.1
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.2
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.1
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.6
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
-0.7
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.4
-0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.0
-0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.0
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.2
-0.2
auxotrophy
YNB Glucose
N.D.
+0.2
+0.2
-0.7
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.2
-0.6
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.1
-0.2
+0.1
growth on ypd
YPD
N.D.
+0.1
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.7
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.5
+0.0
+0.5
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