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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15857 and 15858 are separated by 87 nucleotides
15858 and 15859 are separated by 86 nucleotides
15859 and 15860 are separated by 1065 nucleotides
15860 and 15861 are separated by 271 nucleotides
mRNA_7489: 15857 - K12351 SMPD2 sphingomyelin phosphodiesterase 2, at 408,031 to 409,638
15857
mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732
15858
mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834
15859
mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307
15860
mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387
15861
Group
Condition
mRNA
_7489
mRNA
_7490
mRNA
_7491
mRNA
_7492
mRNA
_7493
15857
15858
15859
15860
15861
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.5
+0.0
-0.0
-0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
-0.3
+0.0
+0.2
-0.0
auxotrophy
Dropout Complete
-0.4
-0.5
-0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.9
+0.0
+0.0
+0.2
growth on oleic acid
YNB Glucose
-0.4
-0.5
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.6
+0.3
-0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.2
+0.2
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.1
-0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.7
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
-0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
-0.1
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.5
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
-0.0
+0.2
-0.1
auxotrophy
YNB Glucose
+0.2
-0.7
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.2
-0.2
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.3
-0.0
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.3
-0.3
-0.1
+0.0
growth on ypd
YPD
+0.2
-0.0
-0.1
-0.3
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.1
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.0
+0.5
+0.3
-0.2
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