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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15858 and 15859 are separated by 86 nucleotides
15859 and 15860 are separated by 1065 nucleotides
15860 and 15861 are separated by 271 nucleotides
15861 and 15862 are separated by 125 nucleotides
mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732
15858
mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834
15859
mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307
15860
mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387
15861
mRNA_7494: 15862 - K05760 PXN paxillin, at 423,513 to 425,436
15862
Group
Condition
mRNA
_7490
mRNA
_7491
mRNA
_7492
mRNA
_7493
mRNA
_7494
15858
15859
15860
15861
15862
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.1
-0.3
-0.1
+0.1
auxotrophy
Dropout Complete
-0.5
-0.2
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.0
+0.0
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
-0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.3
-0.4
-0.3
+0.5
auxotrophy
YNB Glucose
-0.7
+0.1
-0.1
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
+0.0
-0.0
+0.2
growth on oleic acid
YNB Glucose
-0.5
+0.3
-0.1
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.0
+0.2
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
+0.2
-0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.2
+0.1
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.1
-0.0
-0.0
growth on ypd
YPD
-0.0
-0.1
-0.3
+0.5
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
+0.4
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
+0.3
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.2
+0.2
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.5
+0.3
-0.2
+0.2
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