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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15859 and 15860 are separated by 1065 nucleotides
15860 and 15861 are separated by 271 nucleotides
15861 and 15862 are separated by 125 nucleotides
15862 and 15863 are separated by 519 nucleotides
mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834
15859
mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307
15860
mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387
15861
mRNA_7494: 15862 - K05760 PXN paxillin, at 423,513 to 425,436
15862
mRNA_7495: 15863 - K10089 M6PR cation-dependent mannose-6-phosphate receptor, at 425,956 to 427,400
15863
Group
Condition
mRNA
_7491
mRNA
_7492
mRNA
_7493
mRNA
_7494
mRNA
_7495
15859
15860
15861
15862
15863
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.0
-0.3
-0.1
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.0
+0.0
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
+0.0
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.0
+0.0
-0.4
auxotrophy
Dropout Complete
-0.2
+0.1
+0.1
-0.2
-0.3
growth on ypd
YPD
-0.1
-0.3
+0.5
-0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.1
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.3
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-0.0
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
+0.2
+0.4
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.0
+0.2
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.3
+0.5
+0.2
auxotrophy
YNB Glucose
+0.1
-0.1
+0.2
-0.0
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.3
-0.2
+0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.3
+0.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.2
-0.1
+0.2
+0.4
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.2
+0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.4
+0.1
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.0
+0.2
+0.9
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