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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15862 and 15863 are separated by 519 nucleotides
15863 and 15864 are separated by 597 nucleotides
15864 and 15865 are separated by 443 nucleotides
15865 and 15866 are separated by 224 nucleotides
mRNA_7494: 15862 - K05760 PXN paxillin, at 423,513 to 425,436
15862
mRNA_7495: 15863 - K10089 M6PR cation-dependent mannose-6-phosphate receptor, at 425,956 to 427,400
15863
mRNA_7496: 15864 - K03935 NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, at 427,998 to 430,216
15864
mRNA_7497: 15865 - K03685 rnc, DROSHA, RNT1 ribonuclease III, at 430,660 to 431,671
15865
mRNA_7498: 15866 - Hypothetical Protein, at 431,896 to 432,524
15866
Group
Condition
mRNA
_7494
mRNA
_7495
mRNA
_7496
mRNA
_7497
mRNA
_7498
15862
15863
15864
15865
15866
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-1.0
N.D.
-0.4
+0.0
auxotrophy
Dropout Complete
-0.2
-0.3
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.4
N.D.
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
-0.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
N.D.
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.4
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.1
+0.1
growth on ypd
YPD
-0.0
-0.6
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.3
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose
-0.0
+0.2
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.5
N.D.
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.2
N.D.
-0.5
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
N.D.
+0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
N.D.
+0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.3
N.D.
+0.5
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.4
N.D.
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
+0.9
N.D.
+0.5
-0.1
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