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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15863 and 15864 are separated by 597 nucleotides
15864 and 15865 are separated by 443 nucleotides
15865 and 15866 are separated by 224 nucleotides
15866 and 15867 are separated by 1832 nucleotides
mRNA_7495: 15863 - K10089 M6PR cation-dependent mannose-6-phosphate receptor, at 425,956 to 427,400
15863
mRNA_7496: 15864 - K03935 NDUFS2 NADH dehydrogenase (ubiquinone) Fe-S protein 2, at 427,998 to 430,216
15864
mRNA_7497: 15865 - K03685 rnc, DROSHA, RNT1 ribonuclease III, at 430,660 to 431,671
15865
mRNA_7498: 15866 - Hypothetical Protein, at 431,896 to 432,524
15866
mRNA_7499: 15867 - Hypothetical Protein, at 434,357 to 437,673
15867
Group
Condition
mRNA
_7495
mRNA
_7496
mRNA
_7497
mRNA
_7498
mRNA
_7499
15863
15864
15865
15866
15867
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
N.D.
-0.4
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.5
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
+0.2
-0.5
-0.4
auxotrophy
Dropout Complete
-0.3
N.D.
-0.2
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.1
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
+0.1
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.5
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.1
-0.0
growth on ypd
YPD
-0.6
N.D.
+0.0
+0.6
-0.0
auxotrophy
YNB Glucose
+0.2
N.D.
+0.1
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.1
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.3
-0.1
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
+0.4
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+0.4
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.2
+0.6
-0.1
growth on oleic acid
YNB Glucose
+0.4
N.D.
+0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.9
N.D.
+0.5
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.5
+0.2
+0.4
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