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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15866 and 15867 are separated by 1832 nucleotides
15867 and 15868 are separated by 232 nucleotides
15868 and 15869 are separated by 1972 nucleotides
15869 and 15870 are separated by 2877 nucleotides
mRNA_7498: 15866 - Hypothetical Protein, at 431,896 to 432,524
15866
mRNA_7499: 15867 - Hypothetical Protein, at 434,357 to 437,673
15867
mRNA_7500: 15868 - KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1, at 437,906 to 438,768
15868
mRNA_7501: 15869 - Hypothetical Protein, at 440,741 to 441,957
15869
mRNA_7502: 15870 - K19788 OLA1 obg-like ATPase 1, at 444,835 to 446,831
15870
Group
Condition
mRNA
_7498
mRNA
_7499
mRNA
_7500
mRNA
_7501
mRNA
_7502
15866
15867
15868
15869
15870
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-3.6
+0.6
N.D.
auxotrophy
Dropout Complete
-0.1
-0.4
-1.3
-0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.4
-0.9
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.2
-0.8
-0.4
N.D.
auxotrophy
YNB Glucose
-0.1
+0.0
-1.0
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.9
-1.3
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
-0.4
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-1.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
-0.8
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.4
+0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
-0.5
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.3
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
+0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.2
+0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
-0.2
+0.7
N.D.
growth on oleic acid
YNB Oleic Acid
+0.6
-0.1
-0.1
-0.1
N.D.
growth on ypd
YPD
+0.6
-0.0
-0.2
-0.1
N.D.
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