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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15868 and 15869 are separated by 1972 nucleotides
15869 and 15870 are separated by 2877 nucleotides
15870 and 15871 are separated by 938 nucleotides
15871 and 15872 are separated by 682 nucleotides
mRNA_7500: 15868 - KOG2062 26S proteasome regulatory complex, subunit RPN2/PSMD1, at 437,906 to 438,768
15868
mRNA_7501: 15869 - Hypothetical Protein, at 440,741 to 441,957
15869
mRNA_7502: 15870 - K19788 OLA1 obg-like ATPase 1, at 444,835 to 446,831
15870
mRNA_7503: 15871 - Hypothetical Protein, at 447,770 to 449,407
15871
mRNA_7504: 15872 - KOG0621 Phospholipid scramblase, at 450,090 to 451,358
15872
Group
Condition
mRNA
_7500
mRNA
_7501
mRNA
_7502
mRNA
_7503
mRNA
_7504
15868
15869
15870
15871
15872
ypd buoyancy
40 hrs No Buoyancy Separation
-3.6
+0.6
N.D.
-0.5
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-0.2
N.D.
-0.5
+0.1
auxotrophy
Dropout Complete
-1.3
-0.5
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.9
+0.0
N.D.
-0.5
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.3
N.D.
-0.3
+0.2
auxotrophy
YNB Glucose
-1.0
-0.1
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-1.0
-0.1
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
-0.4
N.D.
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.2
N.D.
+0.2
-0.1
growth on ypd
YPD
-0.2
-0.1
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.0
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
N.D.
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.7
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
N.D.
-0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
N.D.
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.2
-0.2
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