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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15874 and 15875 are separated by 470 nucleotides
15875 and 15876 are separated by 255 nucleotides
15876 and 15877 are separated by 239 nucleotides
15877 and 15878 are separated by 151 nucleotides
mRNA_7506: 15874 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 452,663 to 454,398
15874
mRNA_7507: 15875 - K17987 NBR1 next to BRCA1 gene 1 protein, at 454,869 to 457,717
15875
mRNA_7508: 15876 - SUPERFAMILY--SSF52047, at 457,973 to 459,421
15876
mRNA_7509: 15877 - K11548 NUF2, CDCA1 kinetochore protein Nuf2, at 459,661 to 461,495
15877
mRNA_7510: 15878 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 461,647 to 466,734
15878
Group
Condition
mRNA
_7506
mRNA
_7507
mRNA
_7508
mRNA
_7509
mRNA
_7510
15874
15875
15876
15877
15878
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
+0.4
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
+0.6
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
+0.5
N.D.
-0.1
growth on ypd
YPD
+0.3
+0.1
-0.4
N.D.
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.5
-0.3
-0.1
N.D.
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
+0.1
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.0
N.D.
+0.9
growth on oleic acid
YNB Glucose
+0.1
+0.2
+0.0
N.D.
+0.7
auxotrophy
Dropout Complete
-0.1
-0.1
+0.2
N.D.
+1.1
auxotrophy
YNB Glucose
+0.2
-0.1
-0.0
N.D.
+1.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.2
N.D.
+1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
+0.1
N.D.
+1.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
+0.5
N.D.
+1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
+0.1
N.D.
+1.6
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