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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15878 and 15879 are separated by 259 nucleotides
15879 and 15880 are separated by 464 nucleotides
15880 and 15881 are separated by 265 nucleotides
15881 and 15882 are separated by 203 nucleotides
mRNA_7510: 15878 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 461,647 to 466,734
15878
mRNA_7511: 15879 - K01507 ppa inorganic pyrophosphatase, at 466,994 to 468,563
15879
mRNA_7512: 15880 - HMMPfam-ATP synthase E chain-PF05680, at 469,028 to 469,780
15880
mRNA_7513: 15881 - KOG3267 Uncharacterized conserved protein, at 470,046 to 470,823
15881
mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471,027 to 473,637
15882
Group
Condition
mRNA
_7510
mRNA
_7511
mRNA
_7512
mRNA
_7513
mRNA
_7514
15878
15879
15880
15881
15882
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
N.D.
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
N.D.
N.D.
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-0.0
+0.1
growth on ypd
YPD
+0.3
N.D.
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.9
N.D.
N.D.
+0.1
-0.0
growth on oleic acid
YNB Glucose
+0.7
N.D.
N.D.
-0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
N.D.
N.D.
+0.3
+0.2
auxotrophy
Dropout Complete
+1.1
N.D.
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.1
N.D.
N.D.
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+1.3
N.D.
N.D.
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.6
N.D.
N.D.
+0.8
+0.2
auxotrophy
YNB Glucose
+1.1
N.D.
N.D.
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.2
N.D.
N.D.
+0.5
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.6
N.D.
N.D.
+0.6
+0.2
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