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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15883 and 15884 are separated by 528 nucleotides
15884 and 15885 are separated by 238 nucleotides
15885 and 15886 are separated by 140 nucleotides
15886 and 15887 are separated by 419 nucleotides
mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473,987 to 475,256
15883
mRNA_7516: 15884 - HMMPfam-Protoglobin-PF11563, at 475,785 to 476,732
15884
mRNA_7517: 15885 - Hypothetical Protein, at 476,971 to 478,237
15885
mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478,378 to 480,820
15886
mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191
15887
Group
Condition
mRNA
_7515
mRNA
_7516
mRNA
_7517
mRNA
_7518
mRNA
_7519
15883
15884
15885
15886
15887
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.8
-0.1
-0.6
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.2
-0.1
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.5
-0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.7
+0.2
-0.1
+0.0
+0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
-0.2
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+1.3
-0.9
-0.0
-0.2
-0.8
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.7
-0.3
+0.1
-0.3
growth on ypd
YPD
+0.1
-0.5
+0.2
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.5
-0.1
+0.1
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.8
-0.2
+0.4
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.1
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
+1.2
-0.6
+0.3
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.7
+0.2
+0.4
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
+1.8
+0.3
+0.5
-0.4
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+2.3
-1.1
+0.5
-0.4
-0.3
auxotrophy
YNB Glucose
+1.0
+0.4
+0.3
-0.2
-0.1
auxotrophy
Dropout Complete
+1.0
-0.5
+0.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
+0.1
+0.2
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+3.0
-1.2
+0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
-0.0
+0.3
+1.2
growth on oleic acid
YNB Glucose
+1.1
+0.8
+0.7
-0.3
+0.2
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