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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15885 and 15886 are separated by 140 nucleotides
15886 and 15887 are separated by 419 nucleotides
15887 and 15888 are separated by 657 nucleotides
15888 and 15889 are separated by 115 nucleotides
mRNA_7517: 15885 - Hypothetical Protein, at 476,971 to 478,237
15885
mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478,378 to 480,820
15886
mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191
15887
mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482,849 to 487,263
15888
mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487,379 to 489,204
15889
Group
Condition
mRNA
_7517
mRNA
_7518
mRNA
_7519
mRNA
_7520
mRNA
_7521
15885
15886
15887
15888
15889
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
-0.8
+0.5
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
-1.9
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
-0.9
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
+0.2
+0.2
-1.3
growth on oleic acid
YNB Oleic Acid
+0.5
-0.4
-1.3
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.4
-0.5
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.9
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.2
-0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.4
-0.3
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
-0.3
+0.2
-0.1
auxotrophy
YNB Glucose
+0.3
-0.2
-0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.0
-0.5
+0.1
+0.1
growth on ypd
YPD
+0.2
-0.3
+0.1
+0.5
-0.3
auxotrophy
Dropout Complete
+0.4
-0.1
+0.5
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
+0.7
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.4
+0.3
+0.2
growth on oleic acid
YNB Glucose
+0.7
-0.3
+0.2
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.3
+1.2
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+1.1
+0.5
+0.1
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