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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15886 and 15887 are separated by 419 nucleotides
15887 and 15888 are separated by 657 nucleotides
15888 and 15889 are separated by 115 nucleotides
15889 and 15890 are separated by 1223 nucleotides
mRNA_7518: 15886 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 478,378 to 480,820
15886
mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191
15887
mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482,849 to 487,263
15888
mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487,379 to 489,204
15889
mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714
15890
Group
Condition
mRNA
_7518
mRNA
_7519
mRNA
_7520
mRNA
_7521
mRNA
_7522
15886
15887
15888
15889
15890
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-1.9
+0.2
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.8
+0.5
-1.7
+0.7
growth on oleic acid
YNB Oleic Acid
-0.4
-1.3
+0.2
+0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.2
-1.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
-0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.9
+0.2
+0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.9
+0.3
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.3
+0.1
-0.2
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
+0.1
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.5
-0.0
+0.1
+0.6
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.2
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.7
-0.1
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.5
+0.1
+0.1
+0.4
growth on ypd
YPD
-0.3
+0.1
+0.5
-0.3
+0.3
auxotrophy
YNB Glucose
-0.2
-0.1
+0.0
+0.1
+0.7
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.2
+0.2
+0.3
auxotrophy
Dropout Complete
-0.1
+0.5
-0.1
-0.3
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+1.2
+0.4
-0.1
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+1.1
+0.5
+0.1
+0.9
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