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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15887 and 15888 are separated by 657 nucleotides
15888 and 15889 are separated by 115 nucleotides
15889 and 15890 are separated by 1223 nucleotides
15890 and 15891 are separated by 366 nucleotides
mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191
15887
mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482,849 to 487,263
15888
mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487,379 to 489,204
15889
mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714
15890
mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296
15891
Group
Condition
mRNA
_7519
mRNA
_7520
mRNA
_7521
mRNA
_7522
mRNA
_7523
15887
15888
15889
15890
15891
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
+0.2
-0.2
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
-1.3
+0.2
+0.0
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.5
-1.7
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.2
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
-1.3
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.9
+0.3
+0.3
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
-0.2
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.2
-0.1
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.1
+0.1
+0.4
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.0
+0.1
+0.6
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.2
+0.0
+0.6
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.1
-0.1
-0.5
+0.2
auxotrophy
YNB Glucose
-0.1
+0.0
+0.1
+0.7
-0.3
growth on ypd
YPD
+0.1
+0.5
-0.3
+0.3
+0.1
auxotrophy
Dropout Complete
+0.5
-0.1
-0.3
+0.6
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.2
+0.2
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
+0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.4
-0.1
+1.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.1
+0.5
+0.1
+0.9
+0.1
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