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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15890 and 15891 are separated by 366 nucleotides
15891 and 15892 are separated by 246 nucleotides
15892 and 15893 are separated by 109 nucleotides
15893 and 15894 are separated by 110 nucleotides
mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714
15890
mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296
15891
mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493,543 to 495,211
15892
mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495,321 to 495,867
15893
mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495,978 to 498,115
15894
Group
Condition
mRNA
_7522
mRNA
_7523
mRNA
_7524
mRNA
_7525
mRNA
_7526
15890
15891
15892
15893
15894
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.3
+0.2
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.4
-0.4
+0.1
-0.1
auxotrophy
Dropout Complete
+0.6
-0.1
-0.1
-0.2
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.1
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
+0.3
-0.2
-0.4
auxotrophy
YNB Glucose
+0.7
-0.3
+0.1
-0.3
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
+0.4
-0.3
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
-0.1
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.2
+0.0
-0.4
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
+0.2
-0.0
-0.8
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.4
+0.0
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.3
-0.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.0
+0.2
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.2
+0.6
-0.9
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.2
+0.2
+0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
+0.3
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
+0.1
+0.3
+0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
+0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.0
+0.5
-0.3
-0.5
growth on ypd
YPD
+0.3
+0.1
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.1
+0.2
+0.2
-0.5
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