Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 15890 and 15891 are separated by 366 nucleotides15891 and 15892 are separated by 246 nucleotides15892 and 15893 are separated by 109 nucleotides15893 and 15894 are separated by 110 nucleotides mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490,428 to 491,714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296 15891 mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493,543 to 495,211 15892 mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495,321 to 495,867 15893 mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495,978 to 498,115 15894
Group Condition mRNA_7522 mRNA_7523 mRNA_7524 mRNA_7525 mRNA_7526
15890 15891 15892 15893 15894
growth on oleic acid YNB Oleic Acid +0.1 -0.2 -0.3 +0.2 -0.9
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 -0.4 -0.4 +0.1 -0.1
auxotrophy Dropout Complete +0.6 -0.1 -0.1 -0.2 -1.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.1 -0.1 -0.2 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 +0.2 +0.3 -0.2 -0.4
auxotrophy YNB Glucose +0.7 -0.3 +0.1 -0.3 -0.8
auxotrophy YNB Glucose 75mM Methionine +0.6 -0.1 +0.4 -0.3 -1.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.4 -0.1 -0.1 -0.3 -0.3
growth on ricinoleic acid YNB Glucose +0.2 +0.0 -0.4 -0.1 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.4 -0.0 +0.2 -0.0 -0.8
growth on oleic acid YNB Glucose +0.3 -0.1 +0.4 +0.0 -0.7
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.1 +0.3 -0.4 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 +0.0 +0.2 +0.1 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate +0.6 +0.2 +0.6 -0.9 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.2 +0.2 +0.1 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.1 +0.3 +0.1 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.7 +0.1 +0.3 +0.1 -0.6
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.2 +0.3 +0.2 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +1.0 -0.0 +0.5 -0.3 -0.5
growth on ypd YPD +0.3 +0.1 +0.1 +0.1 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.9 +0.1 +0.2 +0.2 -0.5
remove
mRNA_7522
plot
remove
mRNA_7523
plot
remove
mRNA_7524
remove
mRNA_7525
plot
remove
mRNA_7526
plot