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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15891 and 15892 are separated by 246 nucleotides
15892 and 15893 are separated by 109 nucleotides
15893 and 15894 are separated by 110 nucleotides
15894 and 15895 are separated by 244 nucleotides
mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492,081 to 493,296
15891
mRNA_7524: 15892 - BLAST putative heatshock protein [Serpula lacrymans var..., at 493,543 to 495,211
15892
mRNA_7525: 15893 - KOG3425 Uncharacterized conserved protein, at 495,321 to 495,867
15893
mRNA_7526: 15894 - K13289 CTSA, CPY cathepsin A (carboxypeptidase C), at 495,978 to 498,115
15894
mRNA_7527: 15895 - K20031 ZDHHC6 palmitoyltransferase ZDHHC6, at 498,360 to 499,661
15895
Group
Condition
mRNA
_7523
mRNA
_7524
mRNA
_7525
mRNA
_7526
mRNA
_7527
15891
15892
15893
15894
15895
auxotrophy
YNB Glucose
-0.3
+0.1
-0.3
-0.8
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.3
-0.3
-0.8
auxotrophy
Dropout Complete
-0.1
-0.1
-0.2
-1.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
-0.3
-1.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
+0.2
-0.9
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.4
+0.1
-0.1
-0.4
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
-0.1
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.2
-0.4
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.4
+0.0
-0.7
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
-0.0
-0.8
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
+0.1
-0.6
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.6
-0.9
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.5
-0.3
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.3
-0.2
-0.4
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.4
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.2
-0.5
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.1
+0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
+0.1
+0.1
-0.0
growth on ypd
YPD
+0.1
+0.1
+0.1
+0.2
+0.4
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