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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15896 and 15897 are separated by 339 nucleotides
15897 and 15898 are separated by 677 nucleotides
15898 and 15899 are separated by 346 nucleotides
15899 and 15900 are separated by 128 nucleotides
mRNA_7528: 15896 - Hypothetical Protein, at 500,481 to 501,182
15896
mRNA_7529: 15897 - Hypothetical Protein, at 501,522 to 502,180
15897
mRNA_7530: 15898 - Hypothetical Protein, at 502,858 to 503,836
15898
mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474
15899
mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505,603 to 507,822
15900
Group
Condition
mRNA
_7528
mRNA
_7529
mRNA
_7530
mRNA
_7531
mRNA
_7532
15896
15897
15898
15899
15900
auxotrophy
Dropout Complete
-2.9
+0.3
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
+0.1
+0.1
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-2.2
+0.2
+0.2
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-1.2
+0.2
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
+0.3
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.2
-0.7
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.0
+0.1
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
-0.0
-0.2
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.6
-0.0
-0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.1
N.D.
-0.1
growth on ypd
YPD
+0.1
+0.2
-0.0
N.D.
-0.4
auxotrophy
YNB Glucose
-0.5
-0.0
+0.1
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.8
+0.3
+0.0
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.3
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.4
-0.0
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.1
+0.1
-0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.4
+0.1
-0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+2.4
-0.2
-0.5
N.D.
-0.2
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