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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15897 and 15898 are separated by 677 nucleotides
15898 and 15899 are separated by 346 nucleotides
15899 and 15900 are separated by 128 nucleotides
15900 and 15901 are separated by 87 nucleotides
mRNA_7529: 15897 - Hypothetical Protein, at 501,522 to 502,180
15897
mRNA_7530: 15898 - Hypothetical Protein, at 502,858 to 503,836
15898
mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474
15899
mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505,603 to 507,822
15900
mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507,910 to 511,338
15901
Group
Condition
mRNA
_7529
mRNA
_7530
mRNA
_7531
mRNA
_7532
mRNA
_7533
15897
15898
15899
15900
15901
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
-0.5
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.7
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
N.D.
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
N.D.
-0.0
+0.1
auxotrophy
Dropout Complete
+0.3
-0.0
N.D.
-0.3
-0.2
auxotrophy
YNB Glucose
-0.0
+0.1
N.D.
+0.4
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
+0.1
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
N.D.
-0.4
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.3
N.D.
-0.1
+0.2
growth on ypd
YPD
+0.2
-0.0
N.D.
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.4
N.D.
+0.0
+0.4
growth on oleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.2
N.D.
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.0
N.D.
-0.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
+0.3
+0.0
N.D.
+0.4
+0.6
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