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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15899 and 15900 are separated by 128 nucleotides
15900 and 15901 are separated by 87 nucleotides
15901 and 15902 are separated by 323 nucleotides
15902 and 15903 are separated by 141 nucleotides
mRNA_7531: 15899 - K14001 SIL1, SLS1 nucleotide exchange factor SIL1, at 504,183 to 505,474
15899
mRNA_7532: 15900 - K01896 ACSM medium-chain acyl-CoA synthetase, at 505,603 to 507,822
15900
mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507,910 to 511,338
15901
mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511,662 to 512,740
15902
mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512,882 to 513,517
15903
Group
Condition
mRNA
_7531
mRNA
_7532
mRNA
_7533
mRNA
_7534
mRNA
_7535
15899
15900
15901
15902
15903
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-1.0
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.6
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.3
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
-0.4
+0.3
N.D.
auxotrophy
Dropout Complete
N.D.
-0.3
-0.2
-0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+0.4
-0.6
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.3
-0.0
N.D.
growth on ypd
YPD
N.D.
-0.4
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.4
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
+0.6
-0.2
N.D.
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