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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15901 and 15902 are separated by 323 nucleotides
15902 and 15903 are separated by 141 nucleotides
15903 and 15904 are separated by 231 nucleotides
15904 and 15905 are separated by 126 nucleotides
mRNA_7533: 15901 - K10885 XRCC5, KU80, G22P2 ATP-dependent DNA helicase 2 subunit 2, at 507,910 to 511,338
15901
mRNA_7534: 15902 - K07304 msrA peptide-methionine (S)-S-oxide reductase, at 511,662 to 512,740
15902
mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512,882 to 513,517
15903
mRNA_7536: 15904 - KOG2216 Conserved coiled/coiled coil protein, at 513,749 to 514,681
15904
mRNA_7537: 15905 - K13524 ABAT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 514,808 to 517,082
15905
Group
Condition
mRNA
_7533
mRNA
_7534
mRNA
_7535
mRNA
_7536
mRNA
_7537
15901
15902
15903
15904
15905
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
+0.1
N.D.
-1.7
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.1
N.D.
-1.6
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
N.D.
-1.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
-0.3
-0.2
auxotrophy
YNB Glucose
-0.6
-0.2
N.D.
+0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
N.D.
-0.0
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.2
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.1
N.D.
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.3
N.D.
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.0
N.D.
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
N.D.
+0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
-0.2
-0.0
N.D.
+0.4
-0.3
growth on ypd
YPD
+0.3
-0.2
N.D.
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
N.D.
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
N.D.
+0.7
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.3
N.D.
+1.1
+0.3
growth on ricinoleic acid
YNB Glucose
+0.6
-0.2
N.D.
+0.9
+0.5
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