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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15907 and 15908 are separated by 212 nucleotides
15908 and 15909 are separated by 218 nucleotides
15909 and 15910 are separated by 128 nucleotides
15910 and 15911 are separated by 271 nucleotides
mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519,946 to 522,544
15907
mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526
15908
mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930
15909
mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526,059 to 527,753
15910
mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528,025 to 529,460
15911
Group
Condition
mRNA
_7539
mRNA
_7540
mRNA
_7541
mRNA
_7542
mRNA
_7543
15907
15908
15909
15910
15911
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-3.2
+0.6
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-2.4
-0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-1.3
-0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-1.6
-0.4
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-1.1
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-1.2
-0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-1.4
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.8
-0.4
+0.2
auxotrophy
YNB Glucose
+0.2
N.D.
-1.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-1.5
+0.7
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-1.5
+0.6
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.5
-1.3
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-1.5
+0.7
+0.0
growth on oleic acid
YNB Glucose
-0.2
N.D.
-1.3
+0.8
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.9
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
-0.1
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.1
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
+0.5
+0.2
auxotrophy
Dropout Complete
+0.2
N.D.
+0.5
+0.4
-0.1
growth on ypd
YPD
+0.8
N.D.
+0.2
+0.2
+0.1
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