Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15907 and 15908 are separated by 212 nucleotides15908 and 15909 are separated by 218 nucleotides15909 and 15910 are separated by 128 nucleotides15910 and 15911 are separated by 271 nucleotides mRNA_7539: 15907 - K07300 chaA, CAX Ca2+-H+ antiporter, at 519,946 to 522,544 15907 mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526,059 to 527,753 15910 mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528,025 to 529,460 15911
Group Condition mRNA_7539 mRNA_7540 mRNA_7541 mRNA_7542 mRNA_7543
15907 15908 15909 15910 15911
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 N.D. -3.2 +0.6 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 N.D. -2.4 -0.1 +0.7
growth on ricinoleic acid YNB Glucose +0.1 N.D. -1.3 -0.4 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 N.D. -1.6 -0.4 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.1 N.D. -1.1 -0.3 -0.0
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -1.2 -0.0 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.3 N.D. -1.4 -0.3 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. -0.8 -0.4 +0.2
auxotrophy YNB Glucose +0.2 N.D. -1.0 -0.2 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 N.D. -1.5 +0.7 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. -1.5 +0.6 +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 N.D. -0.5 -1.3 +0.8
facs on lipid accumulation Sorted High BODIPY Gate +0.0 N.D. -1.5 +0.7 +0.0
growth on oleic acid YNB Glucose -0.2 N.D. -1.3 +0.8 +0.0
ypd buoyancy 40 hrs Median Buoyancy -0.1 N.D. -0.3 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 N.D. -0.9 +0.7 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 N.D. -0.1 +0.4 +0.0
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. +0.1 -0.2 +0.4
growth on oleic acid YNB Oleic Acid -0.1 N.D. -0.2 +0.5 +0.2
auxotrophy Dropout Complete +0.2 N.D. +0.5 +0.4 -0.1
growth on ypd YPD +0.8 N.D. +0.2 +0.2 +0.1
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