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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15908 and 15909 are separated by 218 nucleotides
15909 and 15910 are separated by 128 nucleotides
15910 and 15911 are separated by 271 nucleotides
15911 and 15912 are separated by 292 nucleotides
mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526
15908
mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930
15909
mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526,059 to 527,753
15910
mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528,025 to 529,460
15911
mRNA_7544: 15912 - K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 529,753 to 531,940
15912
Group
Condition
mRNA
_7540
mRNA
_7541
mRNA
_7542
mRNA
_7543
mRNA
_7544
15908
15909
15910
15911
15912
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-3.2
+0.6
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-2.4
-0.1
+0.7
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-1.1
-0.3
-0.0
+0.0
auxotrophy
YNB Glucose
N.D.
-1.0
-0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-1.3
-0.4
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-1.2
-0.0
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.4
-0.3
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-1.5
+0.7
+0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.6
-0.4
+0.4
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-1.3
+0.8
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
-0.4
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.5
+0.7
-0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.5
+0.6
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
-1.3
+0.8
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.9
+0.7
-0.2
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
-0.2
+0.2
+0.3
growth on ypd
YPD
N.D.
+0.2
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+0.4
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.2
+0.4
+0.3
auxotrophy
Dropout Complete
N.D.
+0.5
+0.4
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.5
+0.2
+0.4
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