Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 15908 and 15909 are separated by 218 nucleotides15909 and 15910 are separated by 128 nucleotides15910 and 15911 are separated by 271 nucleotides15911 and 15912 are separated by 292 nucleotides mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522,757 to 524,526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524,745 to 525,930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526,059 to 527,753 15910 mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528,025 to 529,460 15911 mRNA_7544: 15912 - K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 529,753 to 531,940 15912
Group Condition mRNA_7540 mRNA_7541 mRNA_7542 mRNA_7543 mRNA_7544
15908 15909 15910 15911 15912
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. -3.2 +0.6 -0.3 +0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. -2.4 -0.1 +0.7 +0.2
auxotrophy YNB Glucose 75mM Methionine N.D. -1.1 -0.3 -0.0 +0.0
auxotrophy YNB Glucose N.D. -1.0 -0.2 -0.1 -0.1
growth on ricinoleic acid YNB Glucose N.D. -1.3 -0.4 -0.0 +0.3
auxotrophy YNB Glucose 75mM Arginine N.D. -1.2 -0.0 -0.2 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate N.D. -1.4 -0.3 +0.2 +0.2
facs on lipid accumulation Sorted High BODIPY Gate N.D. -1.5 +0.7 +0.0 -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. -1.6 -0.4 +0.4 +0.5
ypd buoyancy 40 hrs No Buoyancy Separation N.D. -0.5 -1.3 +0.8 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid N.D. -0.8 -0.4 +0.2 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. -1.5 +0.7 -0.1 +0.4
facs on lipid accumulation Sorted No BODIPY Gate N.D. -1.5 +0.6 +0.1 +0.2
growth on oleic acid YNB Glucose N.D. -1.3 +0.8 +0.0 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. -0.9 +0.7 -0.2 +0.3
ypd buoyancy 40 hrs Median Buoyancy N.D. -0.3 -0.2 +0.2 +0.3
growth on ypd YPD N.D. +0.2 +0.2 +0.1 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. -0.1 +0.4 +0.0 +0.2
ypd buoyancy 40 hrs High Buoyancy N.D. +0.1 -0.2 +0.4 +0.3
auxotrophy Dropout Complete N.D. +0.5 +0.4 -0.1 +0.0
growth on oleic acid YNB Oleic Acid N.D. -0.2 +0.5 +0.2 +0.4
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