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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15911 and 15912 are separated by 292 nucleotides
15912 and 15913 are separated by 59 nucleotides
15913 and 15914 are separated by 212 nucleotides
15914 and 15915 are separated by 642 nucleotides
mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528,025 to 529,460
15911
mRNA_7544: 15912 - K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 529,753 to 531,940
15912
mRNA_7545: 15913 - Hypothetical Protein, at 532,000 to 532,304
15913
mRNA_7546: 15914 - K04523 UBQLN, DSK2 ubiquilin, at 532,517 to 534,299
15914
mRNA_7547: 15915 - Hypothetical Protein, at 534,942 to 536,762
15915
Group
Condition
mRNA
_7543
mRNA
_7544
mRNA
_7545
mRNA
_7546
mRNA
_7547
15911
15912
15913
15914
15915
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
-0.4
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.3
N.D.
-0.8
+0.0
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.4
N.D.
-0.1
-0.0
auxotrophy
Dropout Complete
-0.1
+0.0
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
N.D.
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.2
N.D.
-0.3
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.5
N.D.
-0.5
-0.3
growth on oleic acid
YNB Glucose
+0.0
+0.2
N.D.
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
N.D.
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
N.D.
-0.0
-0.2
growth on ypd
YPD
+0.1
-0.1
N.D.
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
-0.2
N.D.
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.3
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.2
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.7
+0.2
N.D.
-0.1
+0.1
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