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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15913 and 15914 are separated by 212 nucleotides
15914 and 15915 are separated by 642 nucleotides
15915 and 15916 are separated by 266 nucleotides
15916 and 15917 are separated by 1644 nucleotides
mRNA_7545: 15913 - Hypothetical Protein, at 532,000 to 532,304
15913
mRNA_7546: 15914 - K04523 UBQLN, DSK2 ubiquilin, at 532,517 to 534,299
15914
mRNA_7547: 15915 - Hypothetical Protein, at 534,942 to 536,762
15915
mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537,029 to 539,584
15916
mRNA_7549: 15917 - Hypothetical Protein, at 541,229 to 541,762
15917
Group
Condition
mRNA
_7545
mRNA
_7546
mRNA
_7547
mRNA
_7548
mRNA
_7549
15913
15914
15915
15916
15917
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.3
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
-0.2
-0.2
-0.5
N.D.
auxotrophy
Dropout Complete
N.D.
-0.1
-0.1
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.5
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.8
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.1
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.1
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.1
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.0
+0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.2
-0.1
N.D.
growth on ypd
YPD
N.D.
+0.4
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.3
+0.3
N.D.
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