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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15918 and 15919 are separated by 529 nucleotides
15919 and 15920 are separated by 299 nucleotides
15920 and 15921 are separated by 423 nucleotides
15921 and 15922 are separated by 126 nucleotides
mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541,914 to 542,318
15918
mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542,848 to 546,528
15919
mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546,828 to 547,296
15920
mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547,720 to 548,858
15921
mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548,985 to 552,468
15922
Group
Condition
mRNA
_7550
mRNA
_7551
mRNA
_7552
mRNA
_7553
mRNA
_7554
15918
15919
15920
15921
15922
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-2.7
+0.1
+0.2
-2.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.1
+0.1
-2.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-0.4
+0.0
-1.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.4
+0.0
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.1
+0.3
-2.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+0.2
+0.1
-1.5
growth on ricinoleic acid
YNB Glucose
N.D.
+1.2
-0.1
-0.1
-2.6
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+1.0
-0.2
-1.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.3
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
+1.1
-0.5
-0.1
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
-0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.7
+0.3
+0.1
-1.1
growth on ypd
YPD
N.D.
+0.6
+0.1
+0.3
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.5
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.9
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.1
+0.0
+0.7
auxotrophy
Dropout Complete
N.D.
+1.0
-0.4
-0.3
+0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.4
-0.0
+0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.4
+0.3
+0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.8
-0.7
+0.0
+1.3
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