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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15920 and 15921 are separated by 423 nucleotides
15921 and 15922 are separated by 126 nucleotides
15922 and 15923 are separated by 338 nucleotides
15923 and 15924 are separated by 350 nucleotides
mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546,828 to 547,296
15920
mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547,720 to 548,858
15921
mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548,985 to 552,468
15922
mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552,807 to 554,579
15923
mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554,930 to 556,179
15924
Group
Condition
mRNA
_7552
mRNA
_7553
mRNA
_7554
mRNA
_7555
mRNA
_7556
15920
15921
15922
15923
15924
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-2.0
-0.0
-1.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.1
-2.6
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
-1.8
-0.3
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
-2.2
-0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
-2.2
+0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
-1.5
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-1.5
-0.1
-0.6
auxotrophy
YNB Glucose
-0.5
-0.1
-0.8
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
-0.2
-1.4
+0.1
-1.2
growth on oleic acid
YNB Glucose
+0.3
+0.1
-1.1
-0.3
-0.3
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
-0.6
-0.5
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.1
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.4
-0.3
+0.1
-0.6
auxotrophy
Dropout Complete
-0.4
-0.3
+0.6
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.0
+1.3
-0.5
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.3
+0.1
-0.3
growth on ypd
YPD
+0.1
+0.3
-0.8
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.2
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.7
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.0
+0.6
+0.2
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.0
+0.3
+0.1
+0.2
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