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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15922 and 15923 are separated by 338 nucleotides
15923 and 15924 are separated by 350 nucleotides
15924 and 15925 are separated by 101 nucleotides
15925 and 15926 are separated by 2352 nucleotides
mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548,985 to 552,468
15922
mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552,807 to 554,579
15923
mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554,930 to 556,179
15924
mRNA_7557: 15925 - Hypothetical Protein, at 556,281 to 558,919
15925
mRNA_7558: 15926 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 561,272 to 563,698
15926
Group
Condition
mRNA
_7554
mRNA
_7555
mRNA
_7556
mRNA
_7557
mRNA
_7558
15922
15923
15924
15925
15926
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.0
-0.0
-1.1
-1.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.5
-0.1
-0.6
-0.6
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-2.2
+0.0
+0.0
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
-0.4
+0.0
+0.7
-0.5
growth on ricinoleic acid
YNB Glucose
-2.6
-0.1
+0.2
+0.4
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.1
-1.2
+0.2
+0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.5
-0.5
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
-0.2
+0.1
-0.2
-0.2
growth on oleic acid
YNB Glucose
-1.1
-0.3
-0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.8
-0.3
-0.2
+0.5
+0.1
auxotrophy
YNB Glucose
-0.8
-0.1
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.2
-0.1
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
-0.6
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
+0.3
-0.4
-1.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.2
-0.5
-0.3
auxotrophy
Dropout Complete
+0.6
-0.4
+0.2
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.2
-0.5
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.1
-0.3
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.3
-0.5
-0.5
-0.2
-0.2
growth on ypd
YPD
-0.8
-0.1
+0.4
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
+0.4
+0.1
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