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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15925 and 15926 are separated by 2352 nucleotides
15926 and 15927 are separated by 249 nucleotides
15927 and 15928 are separated by 408 nucleotides
15928 and 15929 are separated by 702 nucleotides
mRNA_7557: 15925 - Hypothetical Protein, at 556,281 to 558,919
15925
mRNA_7558: 15926 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 561,272 to 563,698
15926
mRNA_7559: 15927 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 563,948 to 564,897
15927
mRNA_7560: 15928 - K12346 SMF metal iron transporter, at 565,306 to 568,103
15928
mRNA_7561: 15929 - KOG2290 Rhomboid family proteins, at 568,806 to 571,438
15929
Group
Condition
mRNA
_7557
mRNA
_7558
mRNA
_7559
mRNA
_7560
mRNA
_7561
15925
15926
15927
15928
15929
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.3
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-1.2
-0.0
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.3
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.3
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
+0.0
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
-0.1
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.1
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
-0.1
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.5
-0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.3
+0.2
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
+0.2
N.D.
N.D.
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