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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15936 and 15937 are separated by 1735 nucleotides
15937 and 15938 are separated by 246 nucleotides
15938 and 15939 are separated by 423 nucleotides
15939 and 15940 are separated by 356 nucleotides
mRNA_7568: 15936 - K18753 ZFP36L butyrate response factor 1, at 586,699 to 589,279
15936
mRNA_7569: 15937 - Hypothetical Protein, at 591,015 to 591,260
15937
mRNA_7570: 15938 - K03138 TFIIF1, GTF2F1, TFG1 transcription initiation factor TFIIF subunit alpha, at 591,507 to 593,664
15938
mRNA_7571: 15939 - K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A, at 594,088 to 595,626
15939
mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534
15940
Group
Condition
mRNA
_7568
mRNA
_7569
mRNA
_7570
mRNA
_7571
mRNA
_7572
15936
15937
15938
15939
15940
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
N.D.
N.D.
-0.8
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
N.D.
N.D.
+0.3
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
N.D.
-0.7
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
N.D.
-0.3
-1.1
ypd buoyancy
40 hrs Median Buoyancy
-1.5
N.D.
N.D.
-0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
N.D.
N.D.
+1.3
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.8
N.D.
N.D.
+0.4
-0.3
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
-0.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.5
N.D.
N.D.
-1.4
-0.5
ypd buoyancy
40 hrs High Buoyancy
-2.0
N.D.
N.D.
+0.4
+1.7
growth on ypd
YPD
-0.8
N.D.
N.D.
+0.5
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-1.7
N.D.
N.D.
+1.1
+1.0
auxotrophy
YNB Glucose
-1.6
N.D.
N.D.
+1.0
+1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
N.D.
N.D.
-0.6
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
N.D.
N.D.
-0.9
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
N.D.
+0.1
+1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.5
N.D.
N.D.
-1.4
+1.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
N.D.
+1.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
N.D.
+1.1
+1.2
auxotrophy
Dropout Complete
+0.3
N.D.
N.D.
+1.3
+1.0
growth on oleic acid
YNB Glucose
+0.9
N.D.
N.D.
+1.0
+2.1
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